Package: BSPBSS 1.0.5
BSPBSS: Bayesian Spatial Blind Source Separation
Gibbs sampling for Bayesian spatial blind source separation (BSP-BSS). BSP-BSS is designed for spatially dependent signals in high dimensional and large-scale data, such as neuroimaging. The method assumes the expectation of the observed images as a linear mixture of multiple sparse and piece-wise smooth latent source signals, and constructs a Bayesian nonparametric prior by thresholding Gaussian processes. Details can be found in our paper: Wu et al. (2022+) "Bayesian Spatial Blind Source Separation via the Thresholded Gaussian Process" <doi:10.1080/01621459.2022.2123336>.
Authors:
BSPBSS_1.0.5.tar.gz
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BSPBSS_1.0.5.tgz(r-4.4-x86_64)BSPBSS_1.0.5.tgz(r-4.4-arm64)BSPBSS_1.0.5.tgz(r-4.3-x86_64)BSPBSS_1.0.5.tgz(r-4.3-arm64)
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BSPBSS.pdf |BSPBSS.html✨
BSPBSS/json (API)
# Install 'BSPBSS' in R: |
install.packages('BSPBSS', repos = c('https://benwu233.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/benwu233/bspbss/issues
Last updated 2 years agofrom:da762898b9. Checks:OK: 1 NOTE: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 09 2024 |
R-4.5-win-x86_64 | NOTE | Nov 09 2024 |
R-4.5-linux-x86_64 | NOTE | Nov 09 2024 |
R-4.4-win-x86_64 | NOTE | Nov 09 2024 |
R-4.4-mac-x86_64 | NOTE | Nov 09 2024 |
R-4.4-mac-aarch64 | NOTE | Nov 09 2024 |
R-4.3-win-x86_64 | NOTE | Nov 09 2024 |
R-4.3-mac-x86_64 | NOTE | Nov 09 2024 |
R-4.3-mac-aarch64 | NOTE | Nov 09 2024 |
Exports:init_bspbsslevelplot2Dmcmc_bspbssoutput_niipre_niisim_2Dimagesum_mcmc_bspbss
Dependencies:abindBayesGPfitbitopscaToolscliclueclustercodetoolscolorspacefansifarverforeachggplot2glmnetgluegplotsgridExtragtablegtoolsicaisobanditeratorsKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmgcvmovMFmunsellneurobasenlmeoro.niftipillarpkgconfigR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadilloRcppEigenrlangRNiftirstiefelscalesshapeskmeansslamsurvivalsvdtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Initial values | init_bspbss |
levelplot for 2D images. | levelplot2D |
MCMC algorithm for Bayesian spatial blind source separation with the thresholded Gaussian Process prior. | mcmc_bspbss |
Write a NIfTI file. | output_nii |
Transforms NIfTI to matrix | pre_nii |
Simulate image data using ICA | sim_2Dimage |
Summarization of the MCMC result. | sum_mcmc_bspbss |