Package: BSPBSS 1.0.5
BSPBSS: Bayesian Spatial Blind Source Separation
Gibbs sampling for Bayesian spatial blind source separation (BSP-BSS). BSP-BSS is designed for spatially dependent signals in high dimensional and large-scale data, such as neuroimaging. The method assumes the expectation of the observed images as a linear mixture of multiple sparse and piece-wise smooth latent source signals, and constructs a Bayesian nonparametric prior by thresholding Gaussian processes. Details can be found in our paper: Wu et al. (2022+) "Bayesian Spatial Blind Source Separation via the Thresholded Gaussian Process" <doi:10.1080/01621459.2022.2123336>.
Authors:
BSPBSS_1.0.5.tar.gz
BSPBSS_1.0.5.zip(r-4.7)BSPBSS_1.0.5.zip(r-4.6)BSPBSS_1.0.5.zip(r-4.5)
BSPBSS_1.0.5.tgz(r-4.6-x86_64)BSPBSS_1.0.5.tgz(r-4.6-arm64)BSPBSS_1.0.5.tgz(r-4.5-x86_64)BSPBSS_1.0.5.tgz(r-4.5-arm64)
BSPBSS_1.0.5.tar.gz(r-4.7-arm64)BSPBSS_1.0.5.tar.gz(r-4.7-x86_64)BSPBSS_1.0.5.tar.gz(r-4.6-arm64)BSPBSS_1.0.5.tar.gz(r-4.6-x86_64)
BSPBSS_1.0.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BSPBSS/json (API)
| # Install 'BSPBSS' in R: |
| install.packages('BSPBSS', repos = c('https://benwu233.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/benwu233/bspbss/issues
Last updated from:da762898b9. Checks:8 NOTE, 2 OK, 3 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 178 | ||
| linux-devel-x86_64 | NOTE | 178 | ||
| source / vignettes | OK | 292 | ||
| linux-release-arm64 | NOTE | 219 | ||
| linux-release-x86_64 | NOTE | 191 | ||
| macos-release-arm64 | NOTE | 157 | ||
| macos-release-x86_64 | NOTE | 325 | ||
| macos-oldrel-arm64 | FAIL | 104 | ||
| macos-oldrel-x86_64 | FAIL | 309 | ||
| windows-devel | NOTE | 143 | ||
| windows-release | NOTE | 145 | ||
| windows-oldrel | FAIL | 58 | ||
| wasm-release | OK | 158 |
Exports:init_bspbsslevelplot2Dmcmc_bspbssoutput_niipre_niisim_2Dimagesum_mcmc_bspbss
Dependencies:abindBayesGPfitbitopscaToolscliclueclustercodetoolscpp11farverforeachggplot2glmnetgluegplotsgridExtragtablegtoolsicaisobanditeratorsKernSmoothlabelinglatticelifecycleMatrixmatrixStatsmovMFneurobaseoro.niftiR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadilloRcppEigenrlangRNiftirstiefelS7scalesshapeskmeansslamsurvivalsvdvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Initial values | init_bspbss |
| levelplot for 2D images. | levelplot2D |
| MCMC algorithm for Bayesian spatial blind source separation with the thresholded Gaussian Process prior. | mcmc_bspbss |
| Write a NIfTI file. | output_nii |
| Transforms NIfTI to matrix | pre_nii |
| Simulate image data using ICA | sim_2Dimage |
| Summarization of the MCMC result. | sum_mcmc_bspbss |
